Camille Marchet \kamij maʁʃɛ\

Logo Email: camille.marchet at univ-lille.fr

CRIStAL, CNRS, Université de Lille

Bio / topics

I am a research associate in BONSAI team (Lille, France). My work focuses on methods and data structures in sequence bioinformatics, with applications to RNA in particular.

Je suis chargée de recherche au CNRS dans l’équipe BONSAI (Lille, France). Je travaille sur des méthodes et structures de données dédiées à la bioinformatique des séquences, avec souvent des applications à l’ARN.

After an engineer degree in Bioinformatics from INSA de Lyon and a MsC in Ecology and Evolution from Université Claude Bernard Lyon 1, I worked for two years as an engineer in ERABLE team (LBBE, Lyon) with Vincent Lacroix. I obtained a PhD funding in GenScale team (Rennes, France), where I was supervised by Pierre Peterlongo. I defended my PhD in 2018 and joined BONSAI in the CRIStAL lab afterwards as a postdoc. Lately I was recruited by the CNRS to work as a researcher in the same lab.

My postdoc took part in Transipedia ANR, with Rayan Chikhi and Mikaël Salson. Transipedia aims at being a transcriptome-encyclopedia, e.g., facilitating indexing, query and exploitation of the numerous publicly available RNA-seq data. I am mostly working on new data structures to index large collections of NGS datasets. Before and during my PhD I worked on methods for transcriptomics, in particular for de novo variants discovery and RNA long read analysis.

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Teaching

YearLevelTopic
2019/2020L2 informatique Université de LilleTP/TP Algorithmique et structures de données
2018/2019L2 informatique Université de LilleTP/TP Algorithmique et structures de données
2016/20174ème et 5ème année école d'ingenieur (M1/M2) INSA RennesModélisation et ingénierie pour le vivant
2016/20172ème année cycle prépa INSA RennesTP/TP Bases de Données
2016/2017M1 ENS RennesBiostatistiques, programmation avec R
2015/2016M1 ENS RennesBiostatistiques, programmation avec R
2014/2015L1 Université Lyon 1TD Mathématiques pour les Sciences de la Vie