Camille Marchet \kamij maʁʃɛ\

Logo Email: camille.marchet at univ-lille.fr

CRIStAL, CNRS, Université de Lille

Camille Marchet


I am a CNRS researcher in sequence bioinformatics. My topics are data structures for indexing sequencing data at scale, and algorithms to work with sequences, in particular de novo and RNA-seq long and short reads.


1. Education

2015-2018
PhD in Computer Science, University of Rennes (France). Thesis title: From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. Jury:
Eric Coissac (MCF HDR Univ Grenoble Alpes, LECA) - Rapporteur
Hélène Touzet (DR CNRS, CRIStAL) - Rapportrice
Examinateurs : Thomas Derrien (CR CNRS, IGDR), Dominique Lavenier (DR CNRS, IRISA), Thierry Lecroq (PR Univ Rouen, LITIS), Anne Siegel (DR CNRS, IRISA), Hagen Tilgner (Lecturer, Weil Cornell NY)
Pierre Peterlongo, (CR Inria, IRISA) - Directeur
2013
MS in Ecology Evolution Biometry, Claude Bernad University of Lyon (France)
Engineer degree in Bioinformatics and modeling, INSA Lyon (France)
2007
Baccalauréat, Lycée Romain Rolland (Clamecy, France)

2. Professional career

2021-..
Chargée de recherche CNRS in BONSAI team, CRIStAL lab, Lille, France
2020-2021
Career break (parental leave) (September 2020-September 2021)
2018-2020
Postdoc in BONSAI team, CRIStAL lab, Lille, France (supervisors: Rayan Chikhi, Mikaël Salson)
2015-2018
PhD student in GenScale team, IRISA lab, Rennes, France (director: Pierre Peterlongo)
2013-2015
Research engineer in ERABLE team, LBBE lab, Lyon, France (supervisor: Vincent Lacroix)

3. Prizes, awards, fellowships

4. Teaching, training and dissemination of science

Supervision

PhD students

2021-..
Khodor Hannoush, subject: Dynamic pangenome graphs, at IRISA/Inria Rennes (France)
Funding: ALPACA ITN.
Implication: 75%. Co-supervised with Pierre Peterlongo (Inria Rennes)

Interns

Thomas Baudeau (M2, 2022), Louis-Maël Gueguen (M2, 2022), Agathénaïs Adiguna (L3, 2020), Benjamin Churcheward (M2, 2018), Lolita Lecompte (M2, 2017), Camille Sessegolo (L3, 2014)

Teaching

As a course responsible

As a part-time lecturer

Training for PhD students & postdocs (summer/winter schools, graduate schools courses)

Training for researchers and professionals

Popularization

Organization of scientific events

As a coordinator

In the organization committee

5. Research administration and management

PhD defense jurys

As an examiner

PhD Thesis advisory committee

6. Editorial/program committees

Reviewing for journals

Program committee for conferences/workshops

External reviewer for conferences

7. Research

Themes

Publications

Peer-reviewed Journal articles

Papers accepted to conferences with proceedings

PhD manuscript

Software

Involvement in research projects

Communication

Research visits

Invited talks to international workshops/conferences

Invited talks to national workshops/conferences

Invited talks to seminars

Selected talks in workshops/conferences

8. Research contracts

As a partner

2022-2026
ANR project INSSANE
~330k euros
collaboration with LIX Polytechnique, CiTCoM Université de Paris and LCBPT Université de Paris
integration of novel algorithms, custom chemistry, and new probing protocols for studying large structured RNA
2022
MAMMALOC
collaboration with INSERM Lille and Bilille bioinformatics platform
3 months of funded engineer
proteo-genomics approach to detect novel cancer signatures